PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014664-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 151aa    MW: 17055 Da    PI: 5.0985
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014664-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB164.31.6e-5134130297
               NF-YB   2 reqdrf.lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                         +eqd++ lPianv+rimk++lP nakisk+aketvqecvsefisfvt+easdkc+rekrkt+ngdd++ a+atlGf+dy epl+ yl+kyr
  WALNUT_00014664-RA  34 KEQDQLqLPIANVGRIMKQILPPNAKISKEAKETVQECVSEFISFVTGEASDKCHREKRKTVNGDDICCAMATLGFDDYGEPLRRYLEKYR 124
                         78887449*********************************************************************************** PP

               NF-YB  92 elegek 97 
                         ele+e+
  WALNUT_00014664-RA 125 ELEEER 130
                         ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-4932142IPR009072Histone-fold
SuperFamilySSF471131.3E-3737135IPR009072Histone-fold
PfamPF008084.5E-2740104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-196886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-1987105No hitNo description
PRINTSPR006152.3E-19106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MADNRGNNLS IREGFKYHFD GASSTASGED APMKEQDQLQ LPIANVGRIM KQILPPNAKI  60
SKEAKETVQE CVSEFISFVT GEASDKCHRE KRKTVNGDDI CCAMATLGFD DYGEPLRRYL  120
EKYRELEEER AQQGKFCNST EENNMKHGNN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4233125192Transcription factor HapC (Eurofung)
4g92_B5e-4233125192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518964.13e-72PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822481e-52NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0R0KWV43e-72A0A0R0KWV4_SOYBN; Uncharacterized protein
STRINGGLYMA02G17310.18e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-47nuclear factor Y, subunit B5